Imperial College London, UK
Predictive modelling for nucleic acid strand displacement in hybrid settings
We will develop predictive models of nucleic acid strand displacement rates to allow the rational design of complex networks of ever-increasing functionality. State of the art models mainly focus on highly-idealised systems that involve only carefully designed DNA strands at low concentrations in well-mixed solutions. In this project, we will study strand displacement technology in more complex, hybrid environments to demonstrate predictive models that can account for these more complex settings. Using molecular-level simulations, basic theory and experimental data, we will develop predictive models of strand displacement reactions in non-ideal settings, in collaboration with the other projects within BioHYBRITE. These areas include: structured environments, such as the synthetic cells; environments with competing interaction partners; and systems with hybrid RNA-DNA duplexes.
Planned Secondments
Technical University Munich
Prof. Friedrich Simmel Lab, Physics of Synthetic Biological Systems
University of Cambridge
Prof. Ulrich Keyser Lab & Dr. Ioanna Mela Lab, Physics of Membrane Transport & DNA Nanotechnology for Targeted Drug Delivery
University of Cambridge
Prof. Lorenzo Di Michele Lab, Artificial Cells, Soft Matter and DNA Nanotechnology
