Imperial College London, UK

Predictive modelling for nucleic acid strand displacement in hybrid settings

We will develop predictive models of nucleic acid strand displacement rates to allow the rational design of complex networks of ever-increasing functionality. State of the art models mainly focus on highly-idealised systems that involve only carefully designed DNA strands at low concentrations in well-mixed solutions. In this project, we will study strand displacement technology in more complex, hybrid environments to demonstrate predictive models that can account for these more complex settings. Using molecular-level simulations, basic theory and experimental data, we will develop predictive models of strand displacement reactions in non-ideal settings, in collaboration with the other projects within BioHYBRITE. These areas include: structured environments, such as the synthetic cells; environments with competing interaction partners; and systems with hybrid RNA-DNA duplexes.

Prof. Thomas Ouldridge

Principal Investigator

Sebastian Grosinger

Doctoral candidate

Planned Secondments

Technical University Munich

Prof. Friedrich Simmel Lab, Physics of Synthetic Biological Systems

University of Cambridge

Prof. Ulrich Keyser Lab & Dr. Ioanna Mela Lab, Physics of Membrane Transport & DNA Nanotechnology for Targeted Drug Delivery

University of Cambridge

Prof. Lorenzo Di Michele Lab, Artificial Cells, Soft Matter and DNA Nanotechnology